BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB021C02SP1|AL427729
(806 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1576 1540 0.0
>3x_Contig1576
Length = 13648
Score = 1540 bits (772), Expect = 0.0
Identities = 796/806 (98%), Gaps = 2/806 (0%)
Strand = Plus / Plus
Query: 2 ttttatatcattacaacacgtaatgagtgaatctgactttttcttttcaaacaaatcttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttttatatcattacaacacgtaatgagtgaatctgactttttcttttcaaacaaatcttt 580
Query: 62 tttttaacttcattttaaccttaaattacagaaacggcaagcagtgaaggtagcaaacat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tttttaacttcattttaaccttaaattacagaaacggcaagcagtgaaggtagcaaacat 640
Query: 122 ttttgaccagaatatatwakctcttggtcagggatattgatgaaatgatttatgtatacg 181
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttttgaccagaatatataagctcttggtcagggatattgatgaaatgatttatgtatacg 700
Query: 182 cattttatggaatttataatatgaaaacctgatacttaaagtacaactgttaatcttcct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cattttatggaatttataatatgaaaacctgatacttaaagtacaactgttaatcttcct 760
Query: 242 tgtactagtctattgtttctgtataatatattatytathattcacctttaacaacgttgt 301
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 761 tgtactagtctattgtttctgtataatatattatttataattcacctttaacaacgttgt 820
Query: 302 tagtcttcaagtctctggcagcgactcttagtacaccttccttgtcaacattgaaaataa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tagtcttcaagtctctggcagcgactcttagtacaccttccttgtcaacattgaaaataa 880
Query: 362 gttctagacccttaacatctttgacacctaattccatcaatttgttacccaattggtagt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 gttctagacccttaacatctttgacacctaattccatcaatttgttacccaattggtagt 940
Query: 422 gcttttctctgataacttctggttcgtcatcttcgtcagaccagtcactttcatcgtctt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 gcttttctctgataacttctggttcgtcatcttcgtcagaccagtcactttcatcgtctt 1000
Query: 482 catcgtcttcagtcttggcaggtttttcttcctttggagctggttctaagacagattcct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 catcgtcttcagtcttggcaggtttttcttcctttggagctggttctaagacagattcct 1060
Query: 542 tgatgtgatgctcaccttcgtagacagcaacggtgawatctccgacagccttcttcaatg 601
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1061 tgatgtgatgctcaccttcgtagacagcaacggtgaaatctccgacagccttcttcaatg 1120
Query: 602 tgatggactttttgactgggtaagaagtttcagccaataatactggaacg-artcaccat 660
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 1121 tgatggactttttgactgggtaagaagtttcagccaataatactggaacgaagtcaccat 1180
Query: 661 tggcatcgactagaccaatatgcttagacaaatgcggtgtgttgataatgattggttcta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 tggcatcgactagaccaatatgcttagacaaatgcggtgtgttgataatgattggttcta 1240
Query: 721 gtgattgggcc-attcatcagcgtcatatgcggacaaaagttgggcttgggtagcrgaac 779
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 1241 gtgattgggccaattcatcagcgtcatatgcggacaaaagttgggcttgggtagcggcac 1300
Query: 780 cggatgcggccaattcgtttggattg 805
||||||||||||||||||||||||||
Sbjct: 1301 cggatgcggccaattcgtttggattg 1326
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6977
Number of Sequences: 1807
Number of extensions: 6977
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 806
length of database: 10,358,551
effective HSP length: 16
effective length of query: 790
effective length of database: 10,329,639
effective search space: 8160414810
effective search space used: 8160414810
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)